3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06419

Details:

PFam ID : PF06419

PFam Domain Description : Conserved oligomeric complex COG6

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 166

Average sequence length: 464.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06419	E5T997_TRISP_3_132	63.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06419	D8LSC3_ECTSI_59_302	100

Sequence based PCA Plot of the family - PF06419 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=289 Length=8
Motif3 Start=128 Length=8
Motif4 Start=249 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay