3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06418

Details:

PFam ID : PF06418

PFam Domain Description : CTP synthase N-terminus

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 941

Average sequence length: 260.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06418	D9PIM0_9ZZZZ_4_279	57.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06418	D6WFV7_TRICA_57_155	100

Sequence based PCA Plot of the family - PF06418 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=38 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay