3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06415

Details:

PFam ID : PF06415

PFam Domain Description : BPG-independent PGAM N-terminus (iPGM_N)

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 805

Average sequence length: 218.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06415	C7HFX9_CLOTM_1_63	70.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06415	A9EZT5_SORC5_91_334	100

Sequence based PCA Plot of the family - PF06415 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=40 Length=17
Motif2 Start=17 Length=8
Motif3 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay