3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06413

Details:

PFam ID : PF06413

PFam Domain Description : Neugrin

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 106

Average sequence length: 141.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06413	D3BAN4_POLPA_874_1060	91.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06413	RRG9_CANGA_60_205	100

Sequence based PCA Plot of the family - PF06413 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=20 Length=27
Motif2 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay