3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06412

Details:

PFam ID : PF06412

PFam Domain Description : Conjugal transfer protein TraD

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 172

Average sequence length: 62.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06412	F0KUE9_YERE3_2_41	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06412	B9BFK8_9BURK_62_133	100

Sequence based PCA Plot of the family - PF06412 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=1 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay