3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06411

Details:

PFam ID : PF06411

PFam Domain Description : HdeA/HdeB family

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 83

Average sequence length: 90.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06411	B2PVU4_PROST_1_44	65.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06411	F0Q134_ACIAP_6_116	100

Sequence based PCA Plot of the family - PF06411 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay