3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06409

Details:

PFam ID : PF06409

PFam Domain Description : Nuclear pore complex interacting protein (NPIP)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 61

Average sequence length: 101.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06409	C9J9U8_HUMAN_320_343	18.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06409	E7EUG2_HUMAN_1_134	96.6

Sequence based PCA Plot of the family - PF06409 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay