3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06403

Details:

PFam ID : PF06403

PFam Domain Description : Lamprin

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 3

Average sequence length: 92

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06403	E9G9A5_DAPPU_137_358	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06403	Q9YHE0_PETMA_1_138	100

Sequence based PCA Plot of the family - PF06403 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=105 Length=8
Motif3 Start=88 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay