3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06401

Details:

PFam ID : PF06401

PFam Domain Description : Alpha-2-macroglobulin RAP, C-terminal domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 41

Average sequence length: 191.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06401	E9G9A5_DAPPU_137_358	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06401	C3Z5M6_BRAFL_1_133	100

Sequence based PCA Plot of the family - PF06401 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay