3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06400

Details:

PFam ID : PF06400

PFam Domain Description : Alpha-2-macroglobulin RAP, N-terminal domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 37

Average sequence length: 112.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06400	B7Q9E5_IXOSC_5_127	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06400	Q6PB52_MOUSE_1_78	100

Sequence based PCA Plot of the family - PF06400 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay