3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06398

Details:

PFam ID : PF06398

PFam Domain Description : Integral peroxisomal membrane peroxin

Number of Sequence in 50% Dataset : 107

Number of Sequence in Full Dataset : 264

Average sequence length: 279.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06398	C1G0H7_PARBD_131_176	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06398	A8P7K3_COPC7_1_423	98.8

Sequence based PCA Plot of the family - PF06398 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=253 Length=8
Motif2 Start=119 Length=8
Motif3 Start=345 Length=8
Motif4 Start=450 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay