3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06397

Details:

PFam ID : PF06397

PFam Domain Description : Desulfoferrodoxin, N-terminal domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 191

Average sequence length: 35.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06397	B0PDQ8_9FIRM_7_37	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06397	F2JPP3_9FIRM_79_112	93.6

Sequence based PCA Plot of the family - PF06397 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=17
Motif2 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay