3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06396

Details:

PFam ID : PF06396

PFam Domain Description : Angiotensin II, type I receptor-associated protein (AGTRAP)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 41

Average sequence length: 136.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06396	B4H085_DROPE_8_75	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06396	E9FSX9_DAPPU_6_173	100

Sequence based PCA Plot of the family - PF06396 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay