3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06395

Details:

PFam ID : PF06395

PFam Domain Description : CDC24 Calponin

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 50

Average sequence length: 87.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06395	B8P3I9_POSPM_74_165	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06395	B8P3I9_POSPM_74_165	100

Sequence based PCA Plot of the family - PF06395 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=67 Length=8
Motif2 Start=13 Length=18
Motif3 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay