3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06392

Details:

PFam ID : PF06392

PFam Domain Description : Acid shock protein repeat

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 18

Average sequence length: 19.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06392	A2E7B7_TRIVA_4_171	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06392	E7B321_YERE1_53_73	100

Sequence based PCA Plot of the family - PF06392 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay