3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06391

Details:

PFam ID : PF06391

PFam Domain Description : CDK-activating kinase assembly factor MAT1

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 147

Average sequence length: 161.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06391	A2E7B7_TRIVA_4_171	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06391	Q1RL40_CIOIN_54_259	100

Sequence based PCA Plot of the family - PF06391 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=8
Motif3 Start=30 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay