3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06390

Details:

PFam ID : PF06390

PFam Domain Description : Neuroendocrine-specific golgi protein P55 (NESP55)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 10

Average sequence length: 151.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06390	A2A2S1_HUMAN_1_166	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06390	A6PW71_MOUSE_1_25	88

Sequence based PCA Plot of the family - PF06390 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=1 Length=8
Motif3 Start=227 Length=11
Motif4 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay