3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06387

Details:

PFam ID : PF06387

PFam Domain Description : D1 dopamine receptor-interacting protein (calcyon)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 22

Average sequence length: 154.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06387	Q8AY93_ONCMY_1_54	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06387	E2RML3_CANFA_1_204	100

Sequence based PCA Plot of the family - PF06387 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=187 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay