3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06386

Details:

PFam ID : PF06386

PFam Domain Description : Gas vesicle synthesis protein GvpL/GvpF

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 258

Average sequence length: 222.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06386	Q18JB2_HALWD_28_326	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06386	Q18JB2_HALWD_28_326	100

Sequence based PCA Plot of the family - PF06386 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=124 Length=8
Motif3 Start=7 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay