3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06379

Details:

PFam ID : PF06379

PFam Domain Description : L-rhamnose-proton symport protein (RhaT)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 74

Average sequence length: 305.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06379	A9UNS0_MONBE_1_230	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06379	Q8A3K1_BACTN_1_335	100

Sequence based PCA Plot of the family - PF06379 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=78 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay