3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06375

Details:

PFam ID : PF06375

PFam Domain Description : Bovine leukaemia virus receptor (BLVR)

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 58

Average sequence length: 324.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06375	A7SDJ0_NEMVE_635_716	64.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06375	E9H0U3_DAPPU_659_1204	100

Sequence based PCA Plot of the family - PF06375 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=119 Length=8
Motif3 Start=144 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay