3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06372

Details:

PFam ID : PF06372

PFam Domain Description : Gemin6 protein

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 28

Average sequence length: 137.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06372	C4QGK3_SCHMA_104_199	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06372	E1FXW1_LOALO_6_178	100

Sequence based PCA Plot of the family - PF06372 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=143 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay