3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06368

Details:

PFam ID : PF06368

PFam Domain Description : Methylaspartate mutase E chain (MutE)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 61

Average sequence length: 399.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06368	A5CZJ8_PELTS_43_485	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06368	A5CZJ8_PELTS_43_485	100

Sequence based PCA Plot of the family - PF06368 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=170 Length=8
Motif2 Start=129 Length=11
Motif3 Start=81 Length=8
Motif4 Start=363 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay