3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06360

Details:

PFam ID : PF06360

PFam Domain Description : Euplotes raikovi mating pheromone

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 7

Average sequence length: 30.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06360	MER10_EUPRA_38_75	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06360	MER22_EUPRA_1_33	66

Sequence based PCA Plot of the family - PF06360 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay