3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06355

Details:

PFam ID : PF06355

PFam Domain Description : Aegerolysin

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 66

Average sequence length: 113.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06355	C5A8H3_BURGB_5_120	63.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06355	D1ZB73_SORMK_4_139	100

Sequence based PCA Plot of the family - PF06355 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=10 Length=11
Motif3 Start=1 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay