3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06351

Details:

PFam ID : PF06351

PFam Domain Description : Allene oxide cyclase

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 44

Average sequence length: 162.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06351	A9TMC7_PHYPA_3_198	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06351	A9TMC7_PHYPA_3_198	100

Sequence based PCA Plot of the family - PF06351 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=36 Length=8
Motif4 Start=110 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay