3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06350

Details:

PFam ID : PF06350

PFam Domain Description : Hormone-sensitive lipase (HSL) N-terminus

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 49

Average sequence length: 231.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06350	F2UC22_9EUKA_177_385	82.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06350	A9VE33_MONBE_86_363	100

Sequence based PCA Plot of the family - PF06350 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay