3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06342

Details:

PFam ID : PF06342

PFam Domain Description : Alpha/beta hydrolase of unknown function (DUF1057)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 28

Average sequence length: 257.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06342	B3SCG7_TRIAD_70_207	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06342	O62084_CAEEL_20_330	100

Sequence based PCA Plot of the family - PF06342 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=267 Length=8
Motif4 Start=40 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay