3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06339

Details:

PFam ID : PF06339

PFam Domain Description : Ectoine synthase

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 158

Average sequence length: 124.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06339	A3H4N8_VIBCH_1_34	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06339	F0WQY9_9STRA_32_171	100

Sequence based PCA Plot of the family - PF06339 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=55 Length=17
Motif2 Start=85 Length=14
Motif3 Start=110 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay