3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06338

Details:

PFam ID : PF06338

PFam Domain Description : ComK protein

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 115

Average sequence length: 145.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06338	C6VP19_LACPJ_59_205	80.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06338	Q2B9A0_9BACI_1_166	100

Sequence based PCA Plot of the family - PF06338 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay