3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06337

Details:

PFam ID : PF06337

PFam Domain Description : DUSP domain

Number of Sequence in 50% Dataset : 148

Number of Sequence in Full Dataset : 288

Average sequence length: 102.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06337	C4JX66_UNCRE_127_274	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06337	E9CGD1_9EUKA_704_909	100

Sequence based PCA Plot of the family - PF06337 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=94 Length=11
Motif2 Start=66 Length=8
Motif3 Start=43 Length=8
Motif4 Start=109 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay