3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06333

Details:

PFam ID : PF06333

PFam Domain Description : Mediator complex subunit 13 C-terminal

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 116

Average sequence length: 353.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06333	Q5C2F1_SCHJA_1_221	80.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06333	B4LB77_DROVI_2326_2851	97.3

Sequence based PCA Plot of the family - PF06333 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=225 Length=11
Motif2 Start=169 Length=8
Motif3 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay