3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06331

Details:

PFam ID : PF06331

PFam Domain Description : Transcription factor TFIIH complex subunit Tfb5

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 109

Average sequence length: 66.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06331	Q5KNI4_CRYNE_8_58	35.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06331	Q84QI3_CHLRE_1_72	100

Sequence based PCA Plot of the family - PF06331 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay