3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06328

Details:

PFam ID : PF06328

PFam Domain Description : Ig-like C2-type domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 57

Average sequence length: 83.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06328	F1NCH9_CHICK_26_92	23.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06328	B5X2W2_SALSA_27_93	100

Sequence based PCA Plot of the family - PF06328 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay