3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06320

Details:

PFam ID : PF06320

PFam Domain Description : GCN5-like protein 1 (GCN5L1)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 98

Average sequence length: 111.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06320	A4R7H4_MAGO7_127_240	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06320	F2UFU0_9EUKA_5_127	98.9

Sequence based PCA Plot of the family - PF06320 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=49 Length=8
Motif4 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay