3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06317

Details:

PFam ID : PF06317

PFam Domain Description : Arenavirus RNA polymerase

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 53

Average sequence length: 1402.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06317	L_OLVVA_1_2233	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06317	L_OLVVA_1_2233	100

Sequence based PCA Plot of the family - PF06317 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=88 Length=8
Motif3 Start=117 Length=8
Motif4 Start=210 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay