3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06315

Details:

PFam ID : PF06315

PFam Domain Description : Isocitrate dehydrogenase kinase/phosphatase (AceK)

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 118

Average sequence length: 520.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06315	A1ZIX6_9BACT_484_547	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06315	E6RKP7_PSEU9_21_589	100

Sequence based PCA Plot of the family - PF06315 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=462 Length=17
Motif2 Start=26 Length=8
Motif3 Start=88 Length=11
Motif4 Start=200 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay