3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06314

Details:

PFam ID : PF06314

PFam Domain Description : Acetoacetate decarboxylase (ADC)

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 302

Average sequence length: 222.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06314	E1QY44_OLSUV_12_287	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06314	Q9RY02_DEIRA_18_272	100

Sequence based PCA Plot of the family - PF06314 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=117 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay