3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06309

Details:

PFam ID : PF06309

PFam Domain Description : Torsin

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 99

Average sequence length: 116.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06309	B3S3K1_TRIAD_22_151	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06309	B3SD48_TRIAD_54_186	100

Sequence based PCA Plot of the family - PF06309 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=27 Length=8
Motif3 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay