3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06308

Details:

PFam ID : PF06308

PFam Domain Description : 23S rRNA methylase leader peptide (ErmC)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 4

Average sequence length: 20.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06308	O90696_9ALPH_23_236	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06308	Q93CM2_ENTHR_1_27	100

Sequence based PCA Plot of the family - PF06308 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay