3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06306

Details:

PFam ID : PF06306

PFam Domain Description : Beta-1,4-N-acetylgalactosaminyltransferase (CgtA)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 35

Average sequence length: 189.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06306	E5ZBU4_CAMJE_2_94	53.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06306	E5ZBU4_CAMJE_2_94	94.1

Sequence based PCA Plot of the family - PF06306 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=96 Length=8
Motif4 Start=211 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay