3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06294

Details:

PFam ID : PF06294

PFam Domain Description : Domain of Unknown Function (DUF1042)

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 197

Average sequence length: 136.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06294	B4QNA8_DROSI_1_98	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06294	F2ULS9_9EUKA_5_183	100

Sequence based PCA Plot of the family - PF06294 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=1 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay