3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06293

Details:

PFam ID : PF06293

PFam Domain Description : Lipopolysaccharide kinase (Kdo/WaaP) family

Number of Sequence in 50% Dataset : 184

Number of Sequence in Full Dataset : 581

Average sequence length: 171.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06293	A2RAB9_ASPNC_77_205	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06293	Q9Z6C4_PSEAE_22_222	100

Sequence based PCA Plot of the family - PF06293 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=8
Motif3 Start=94 Length=8
Motif4 Start=121 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay