3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06289

Details:

PFam ID : PF06289

PFam Domain Description : Flagellar protein FlbT

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 171

Average sequence length: 59.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06289	C0R1A4_BRAHW_1_39	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06289	E0RUR6_BUTPB_5_56	99.4

Sequence based PCA Plot of the family - PF06289 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay