3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06284

Details:

PFam ID : PF06284

PFam Domain Description : Cytomegalovirus UL84 protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 10

Average sequence length: 281.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06284	B7TPY8_9BETA_54_441	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06284	Q8QS15_9BETA_1_573	100

Sequence based PCA Plot of the family - PF06284 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=276 Length=11
Motif4 Start=238 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay