3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06283

Details:

PFam ID : PF06283

PFam Domain Description : Trehalose utilisation

Number of Sequence in 50% Dataset : 158

Number of Sequence in Full Dataset : 561

Average sequence length: 221.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06283	E3YSA0_9LIST_1_117	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06283	Q4PE65_USTMA_34_309	99.6

Sequence based PCA Plot of the family - PF06283 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=4 Length=8
Motif3 Start=269 Length=8
Motif4 Start=191 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay