3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06280

Details:

PFam ID : PF06280

PFam Domain Description : Fn3-like domain (DUF1034)

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 262

Average sequence length: 112.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06280	B1C4L1_9FIRM_816_964	26.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06280	B1C4L1_9FIRM_816_964	97.3

Sequence based PCA Plot of the family - PF06280 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=94 Length=8
Motif4 Start=127 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay