3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06268

Details:

PFam ID : PF06268

PFam Domain Description : Fascin domain

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 213

Average sequence length: 105.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06268	D2GWQ9_AILME_285_393	61.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06268	FASC_STRPU_138_254	99.5

Sequence based PCA Plot of the family - PF06268 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=58 Length=8
Motif3 Start=17 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay