3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06267

Details:

PFam ID : PF06267

PFam Domain Description : Family of unknown function (DUF1028)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 218

Average sequence length: 189.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06267	Q97X10_SULSO_4_82	64.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06267	B8C875_THAPS_20_257	100

Sequence based PCA Plot of the family - PF06267 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=83 Length=8
Motif3 Start=32 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay