3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06261

Details:

PFam ID : PF06261

PFam Domain Description : Actinobacillus actinomycetemcomitans leukotoxin activator LktC

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 93.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06261	A7BAG1_9ACTO_18_91	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06261	O50557_AGGAC_1_149	100

Sequence based PCA Plot of the family - PF06261 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=38

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay